perform_pairwise_t_test: Perform pairwise t-tests

In antonvsdata/amp: Smoothing Metabolomics Analyses

Description

Performs pairwise t-tests between all study groups. NOTE! Does not use formula interface

Usage

perform_pairwise_t_test(object, group = group_col(object),
  all_features = FALSE, ...)

Arguments

object	a MetaboSet object
group	character, column name of phenoData giving the groups
all_features	should all features be included in FDR correction?
...	other parameters passed to perform_t_test, and eventually to base R t.test

Details

P-values of each comparison are corrected separately from each other.

Value

data frame with the results

See Also

perform_t_test, t.test

Examples

#Including QCs as a study group for example
t_test_results <- perform_pairwise_t_test(merged_sample, group = "Group")

antonvsdata/amp documentation built on Jan. 8, 2020, 3:15 a.m.