plot_phyloheatmap: Build a phylostratigraphic heatmap

In arendsee/phylostratr: Analyze phylostratigraphic data

Build a phylostratigraphic heatmap

Description

Build a phylostratigraphic heatmap

Usage

plot_phyloheatmap(
  hits,
  tree = NULL,
  n = 50,
  focal_id = NULL,
  to_name = TRUE,
  ...
)

Arguments

hits	A table of best hits
tree	An optional phylo object, if it is not given, a tree will be infrerred from the taxon IDs in the 'staxid' column. This will work only if all these IDs are valid NCBI taxonomy IDs.
n	The number of genes to display per page
focal_id	The focal taxonomy ID (if given, this will be used to order the tree relative with the focal species on top)
to_name	If TRUE, then the tip labels will be converted from taxonomy IDs to scientific names

Value

ggtree object

arendsee/phylostratr documentation built on Dec. 23, 2024, 1:31 p.m.