prune_phylostrata: Given a strata table, remove given strata
In arendsee/phylostratr: Analyze phylostratigraphic data
prune_phylostrata R Documentation
Given a strata table, remove given strata
Description
The genes in a stratum that is removed will be reassigned to the parent
stratum. If the stratum is the root stratum, the genes will instead be
reassigned to the child stratum.
Usage
prune_phylostrata(strata_table, strata_names)
Arguments
strata_table
data.frame with the factored column 'mrca_name'
strata_names
character vector of strata to drop
Details
Note that removing strata will result in non-monophyletic branches.
arendsee/phylostratr documentation built on Dec. 31, 2022, 10:22 a.m.
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| prune_phylostrata | R Documentation |
Given a strata table, remove given strata
Description
The genes in a stratum that is removed will be reassigned to the parent stratum. If the stratum is the root stratum, the genes will instead be reassigned to the child stratum.
Usage
prune_phylostrata(strata_table, strata_names)
Arguments
strata_table |
data.frame with the factored column 'mrca_name' |
strata_names |
character vector of strata to drop |
Details
Note that removing strata will result in non-monophyletic branches.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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