run_blastp | R Documentation |
BLAST query protein FASTA file against a subject species
run_blastp( query_fastafile, subject_taxid, blastdb, blastresult = paste0(subject_taxid, ".tab"), nthreads = 1, seg = FALSE, verbose = TRUE )
query_fastafile |
A protein FASTA file for the focal species |
subject_taxid |
The subject NCBI taxon ID |
blastdb |
A path to a blast database (as returned from |
blastresult |
The output TAB-delimited result file |
nthreads |
Number of threads |
seg |
Whether to mask the query protein sequences |
verbose |
Print progress messages |
The path to the tabular BLAST result output
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