run_hmmscan: Find domains in a protein file
In arendsee/phylostratr: Analyze phylostratigraphic data
run_hmmscan R Documentation
Find domains in a protein file
Description
Find domains in a protein file
Usage
run_hmmscan(fastafile, db, nthreads = 1)
Arguments
fastafile
The name of a protein FASTA file
db
The name of a HMM database (e.g. PFAM)
nthreads
Number of cores to use (leave two or more threads free)
Value
A list containing two dataframe: tblout and domtblout (see HMMer manual)
arendsee/phylostratr documentation built on Dec. 31, 2022, 10:22 a.m.
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| run_hmmscan | R Documentation |
Find domains in a protein file
Description
Find domains in a protein file
Usage
run_hmmscan(fastafile, db, nthreads = 1)
Arguments
fastafile |
The name of a protein FASTA file |
db |
The name of a HMM database (e.g. PFAM) |
nthreads |
Number of cores to use (leave two or more threads free) |
Value
A list containing two dataframe: tblout and domtblout (see HMMer manual)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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