uniprot_retrieve_proteome: Retrieve UniProt proteome
In arendsee/phylostratr: Analyze phylostratigraphic data
View source: R/uniprot-access.R
uniprot_retrieve_proteome R Documentation
Retrieve UniProt proteome
Description
The proteome is written to a file with the name '<taxid>.faa', for example,
Arabidopsis thaliana, which has the id 3702, will be written the '3702.faa'.
Usage
uniprot_retrieve_proteome(taxid, dir = "uniprot-seqs", verbose = TRUE)
Arguments
taxid
An NCBI taxonomy id
dir
Directory in which to write all FASTA files
verbose
Be super chatty
Examples
## Not run:
# uniprot_retrieve_proteome(3702)
## End(Not run)
arendsee/phylostratr documentation built on Dec. 31, 2022, 10:22 a.m.
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View source: R/uniprot-access.R
| uniprot_retrieve_proteome | R Documentation |
Retrieve UniProt proteome
Description
The proteome is written to a file with the name '<taxid>.faa', for example, Arabidopsis thaliana, which has the id 3702, will be written the '3702.faa'.
Usage
uniprot_retrieve_proteome(taxid, dir = "uniprot-seqs", verbose = TRUE)
Arguments
taxid |
An NCBI taxonomy id |
dir |
Directory in which to write all FASTA files |
verbose |
Be super chatty |
Examples
## Not run: # uniprot_retrieve_proteome(3702) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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