binSegments: Split a segmented copy number profile into a set of...
In arnevpladsen/CARMA: Calculate CARMA scores

View source: R/binSegments.R View source: R/binSegments 2.R

This function will not be called directly by the user. The function splits a segmented copy number profile into a set of predefined bins, defined by the binRegions function.

1	binSegments(seg, bin.regions)

`seg`	a data frame containing the input copy number profile. Output from the `continuousSegments` function.
`bin.regions`	a data frame with predefinded bin regions. Output from the `binRegions` function.

segment <- test.data[[1]]
seg = continuousSegments(seg=segment,hg=hg19, exclude.x.chrom=F)
bin.reg <- binRegions(hg=hg19, bin.width=3*10^7, overlap=T)
bin.seg <- binSegments(seg=seg, bin.regions=bin.reg)