hg19_genes: hg19 gene reference positions

In arnevpladsen/CARMA: Calculate CARMA scores

Description

Gene annotation file with genomic start and end positions for all genes. The gene annotation data is exctracted from the "Comprehensive gene annotation" GTF file for hg19, which is based on hg38, release 32 (GRCh38.p13) and mapped to hg19, obtained from the GENCODE website.

Usage

hg19_genes

Format

This data frame contains the following 5 columns:

chr

a factor giving the chromosome number

startpos

a numeric vector giving the hg38 start position of the gene

endpos

a numeric vector giving the hg38 end position of the gene

gene_id

a factor giving the Ensembl gene annotation ID

gene_name

a factor giving the gene name

Source

https://www.gencodegenes.org/human/release_32lift37.html

Examples

head(hg19_genes)

arnevpladsen/CARMA documentation built on Dec. 19, 2021, 4:39 a.m.