carma.S5: Calculate CARMA score LOH

Description Usage Arguments Value Examples

View source: R/carma.S5.R View source: R/carma.S5 2.R

Description

This function will not be called directly by the user. The function is used by the carma.all function to calculate the CARMA score LOH, a measure of the extent of regional loss-of-heterozygosity.

Usage

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carma.S5(seg)

Arguments

seg

a data frame with copy number data corresponing to one region.

Value

A numeric score.

Examples

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segment <- test.data[[1]]
seg <- segment[segment$chr==1, ] 
carma.S5(seg)

arnevpladsen/CARMA documentation built on Dec. 19, 2021, 4:39 a.m.