Files in aryeelab/sparseHiC
Efficient compression and analysis of Hi-C Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AWS.R
R/HiCPlotter.R
R/access.R
R/boundaryScore.R
R/coreCompress.R
R/coreHelp.R
R/data.R
R/hicpro.R
R/primitive.R
R/sparseHiC-class.R
R/sparseHiC.R
R/toDNAlandscapeR.R
README.md
inst/extdata/chrom_hg18.sizes
inst/extdata/chrom_hg19.sizes
inst/extdata/chrom_hg38.sizes
inst/extdata/chrom_mm10.sizes
inst/extdata/chrom_mm8.sizes
inst/extdata/chrom_mm9.sizes
inst/rda/geneinfo.h.rda
inst/rda/geneinfo.m.rda
inst/rda/human.genes.rda
inst/rda/loops.small.rda
inst/rds/IMR90datum1.rds
inst/rds/hESCdata.rds
inst/rds/hESCdatum1.rds
inst/rds/hESCdatum2.rds
man/HiCPro2DNAlandscapeR.Rd
man/IMR90datum1.Rd
man/computeBoundaryScores.Rd
man/exportDNAlandscapeR.Rd
man/geneinfo.Rd
man/getChromosome.Rd
man/getHiCMatrix.Rd
man/getHiCcolor.Rd
man/getResolution.Rd
man/getSampleFromBucket.Rd
man/getSamplesFromBucket.Rd
man/hESCdata.Rd
man/hESCdatum1.Rd
man/hESCdatum2.Rd
man/import.HiCPro.Rd
man/import.HiCPro.full.Rd
man/plotHiC.Rd
man/plus-sparseHiCdatum-sparseHiCdatum-method.Rd
man/samplesInBucket.Rd
man/sparseHiC.Rd
man/sparseHiCdata-class.Rd
man/sparseHiCdatum-class.Rd
sparseHiC.Rproj
tests/testthat.R
tests/testthat/test_sparseHiC.R
