getSamplesFromBucket: Import multiple Hi-C samples from AWS Bucket

Description Usage Arguments Value Examples

Description

getSamplesFromBucket returns a sparseHiCdata object when the user specifies multiple sample names present in the bucket

Usage

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getSamplesFromBucket(samples, bucket, chr = NA, organism = "human")

## S4 method for signature 'ANY'
getSamplesFromBucket(samples, bucket, chr = NA,
  organism = "human")

Arguments

samples

The names of the samples

bucket

Name of the AWS bucket.

chr

= NA Specify which chromosomes to pull down; if left with NA, then by default, all chromosomes will be pulled down

organism

= "human" or "mouse" likely supported

Value

A sparseHiCdata object

Examples

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# Import chromosome 4 from DNAlandscapeR bucket
samples <- c("GM12878", "IMR90")
# two <- getSamplesFromBucket(samples, "dnalandscaper", c("chr1", "chr4"))

aryeelab/sparseHiC documentation built on May 12, 2019, 3:43 a.m.