IMR90datum1: IMR90 Sample

In aryeelab/sparseHiC: Efficient compression and analysis of Hi-C Data

Description

A sparseHiCdatum object from the IMR90 replicate1

Format

A small loops object

sampleName

IMR90_1

resolutionNamedList

1Mb with chr20-22

metaData

Shows alignment to hg19

Value

A sparseHiCdatum

Source

# IMR90_1 matrix.files <- paste(system.file("extdata", package = "processedHiCdata"), "HiC-Pro/hIMR90_Rep1/hIMR90_Rep1_1000000_iced.matrix", sep = "/") bed.files <- paste(system.file("extdata", package = "processedHiCdata"), "HiC-Pro/hIMR90_Rep1/hIMR90_Rep1_1000000_abs.bed", sep = "/") i1 <- import.HiCPro(matrix.files, bed.files, resolutions, sampleName = "IMR90_1", genomeBuild) IMR90datum1 <- getChromosome(i1, c("chr20", "chr21", "chr22"), FALSE) saveRDS(IMR90datum1, "inst/rds/IMR90datum1.rds")

aryeelab/sparseHiC documentation built on May 12, 2019, 3:43 a.m.