hESCdatum1: hESC1 Sample

In aryeelab/sparseHiC: Efficient compression and analysis of Hi-C Data

Description

A sparseHiCdatum object from the ESC replicate 1

Format

A small loops object

sampleName

hESC1

resolutionNamedList

1Mb with chr20-22

metaData

Shows alignment to hg19

Value

A sparseHiCdatum

Source

# hESC1 matrix.files <- paste(system.file("extdata", package = "processedHiCdata"), "HiC-Pro/hESC_Rep1/hESC_Rep1_1000000_iced.matrix", sep = "/") bed.files <- paste(system.file("extdata", package = "processedHiCdata"), "HiC-Pro/hESC_Rep1/hESC_Rep1_1000000_abs.bed", sep = "/") e1 <- import.HiCPro(matrix.files, bed.files, resolutions, sampleName = "hESC1", genomeBuild) hESCdatum1 <- getChromosome(e1, c("chr20", "chr21", "chr22"), FALSE) saveRDS(hESCdatum1, "inst/rds/hESCdatum1.rds")

aryeelab/sparseHiC documentation built on May 12, 2019, 3:43 a.m.