Man pages for aryeelab/sparseHiC
Efficient compression and analysis of Hi-C Data
| computeBoundaryScores | Compute boundary scores |
| exportDNAlandscapeR | Export sparseHiCdatum to DNAlandscapeR files |
| geneinfo | Human/mouse exon locations |
| getChromosome | Grab a specific chromosome |
| getHiCcolor | Get a color ramp for plotting |
| getHiCMatrix | Grab a specific sparse Hi-C matrix |
| getResolution | Grab a sample's specific resolution |
| getSampleFromBucket | Import HiC Sample from AWS Bucket |
| getSamplesFromBucket | Import multiple Hi-C samples from AWS Bucket |
| hESCdata | hESC Samples |
| hESCdatum1 | hESC1 Sample |
| hESCdatum2 | hESC2 Sample |
| HiCPro2DNAlandscapeR | Export DNAlandscapeR files straight from HiC Pro Output |
| import.HiCPro | Compress Hi-C Pro output data |
| import.HiCPro.full | Compress all Hi-C Pro output data, including interchromosomal... |
| IMR90datum1 | IMR90 Sample |
| plotHiC | Plot HiC samples |
| plus-sparseHiCdatum-sparseHiCdatum-method | Combining together multiple Hi-C Samples |
| samplesInBucket | List Available Hi-C Samples from an AWS Bucket |
| sparseHiC | sparseHiC: Efficient parallelized compression of Hi-C Data |
| sparseHiCdata-class | A class to Hi-C data from multiple samples; collection of the... |
| sparseHiCdatum-class | A class to Hi-C data from a single sample but multiple... |
