LAPP: LAPP
In ash129/LAPP: Ligand Analysis with Physicochemical Properties
Description
Ligand Analysis with Physicochemical Properties (LAPP) uses position by property features of HLA ligand sequences for their statistical analysis.
The package includes functions to translate HLA ligand sequences into pseudo-continuous features.
LAPP also provides statistical tests to assess how ligand sequences from different HLA differ from one another, as well as from random non-ligand peptide sequeces.
The package also includes wrapper code to create PCA scatterplots and heatmaps.
ash129/LAPP documentation built on May 10, 2019, 1:52 p.m.
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Description
Ligand Analysis with Physicochemical Properties (LAPP) uses position by property features of HLA ligand sequences for their statistical analysis. The package includes functions to translate HLA ligand sequences into pseudo-continuous features. LAPP also provides statistical tests to assess how ligand sequences from different HLA differ from one another, as well as from random non-ligand peptide sequeces. The package also includes wrapper code to create PCA scatterplots and heatmaps.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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