LAPP.plot.tSNE: Plot LAPP tSNE

In ash129/LAPP: Ligand Analysis with Physicochemical Properties

Description

LAPP.plot.tSNE() takes in a list object returned by LAPP.tSNE() and plots it. Uses ggplot2.

Usage

LAPP.plot.tSNE(tsne, type = "density", colors = c("#000000", "#E69F00",
  "#56B4E9", "#009E73", "#F0E442", "#0072B2", "#D55E00", "#CC79A7"),
  clust.dict = NA)

Arguments

tsne	modified PCA object returned by LAPP.tsne(). Can take up to 8 different HLA alleles.
type	How the PCA should be plotted. Either 'points' for scatterplot or 'density' for an automated 2D KDE plot (default).
colors	list of colors for coloring different HLA in the plot. Defaults to a colorblind palette with 8 colors.
clust.dict	optional argument for clustering HLAs together for coloring.

ash129/LAPP documentation built on May 10, 2019, 1:52 p.m.