make.features: Create a converted three-dimensional feature array using a...
In ash129/LAPP: Ligand Analysis with Physicochemical Properties
Description
Usage
Arguments
Value
Description
make.features() takes in a list of ligands from one HLA and returns
a three dimensional converted feature array of the HLA's ligands using a conversion matrix.
The dimensions in order are sequence, position, and property.
Usage
1
make.features(ligands, AA.tab, n.pos = 9)
Arguments
ligands
list of HLA peptide sequences from one HLA allele.
AA.tab
feature conversion matrix.
n.pos
length of peptides (number of amino acids) in the list of ligands ligands
to convert into features. Defaults to nonamers (9).
Value
a three-dimensional array with peptide sequence, amino acid position, and amino acid property
as the dimensions
ash129/LAPP documentation built on May 10, 2019, 1:52 p.m.
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Description Usage Arguments Value
Description
make.features() takes in a list of ligands from one HLA and returns
a three dimensional converted feature array of the HLA's ligands using a conversion matrix.
The dimensions in order are sequence, position, and property.
Usage
1 | make.features(ligands, AA.tab, n.pos = 9)
|
Arguments
ligands |
list of HLA peptide sequences from one HLA allele. |
AA.tab |
feature conversion matrix. |
n.pos |
length of peptides (number of amino acids) in the list of ligands |
Value
a three-dimensional array with peptide sequence, amino acid position, and amino acid property as the dimensions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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