make.features.list: Create list of feature arrays using a list of list of ligands...

In ash129/LAPP: Ligand Analysis with Physicochemical Properties

Description

make.features.list() takes in a list of ligands from read.ligand.files() and returns a list of feature arrays using make.features().

Usage

make.features.list(ligands.list, AA.tab, n.pos)

Arguments

ligands.list	List of list of HLA allele ligand sequences created by read.lig.files().
AA.tab	Feature conversion matrix.
n.pos	Length of peptides (number of amino acids) in the list of ligands ligands to convert into features. Defaults to nonamers (9).

Value

a list of a three-dimensional arrays with peptide sequence, amino acid position, and amino acid property as the dimensions

ash129/LAPP documentation built on May 10, 2019, 1:52 p.m.