Asko_start: Asko_start

In askomics/askoR: askoR - Differential Expresion Analysis using edgeR

Asko_start

Description

Initialize and Scans parameters from command line in a python-like style:

• declare options, their flags, types, default values and help messages,

• read the arguments passed to the R script and parse them according to what has been declared in step 1.

Parameters can be called by their names as declared in opt object.

Usage

Asko_start()

Value

List of parameters that contains all arguments.

Note

All parameters were describe in README documentation

Examples

   parameters <- Asko_start()
   parameters$threshold_cpm <- 1  # Set parameters threshold cpm to new value

askomics/askoR documentation built on Feb. 4, 2023, 5 a.m.