GEfilt: GEfilt

View source: R/GEfilt.R

GEfiltR Documentation

GEfilt

Description

  • Filter genes according to cpm threshold value and replicated cpm option value.

  • Plot different graphes to explore data before and after filtering.

Usage

GEfilt(data_list, parameters)

Arguments

data_list

list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations)

parameters

list that contains all arguments charged in Asko_start

Value

filtered_counts, large DGEList with filtered counts and data descriptions.

Examples

## Not run: 
    filtered_counts<-GEfilt(data, parameters)

## End(Not run)


askomics/askoR documentation built on Aug. 11, 2024, 11:05 p.m.