GEfilt: GEfilt

In askomics/askoR: Differential Expression Analysis using 'edgeR'

GEfilt

Description

• Filter genes according to cpm threshold value and replicated cpm option value.

• Plot different graphes to explore data before and after filtering.

Usage

GEfilt(data_list, parameters)

Arguments

data_list	list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations)
parameters	list that contains all arguments charged in Asko_start

Value

large DGEList with filtered counts and data descriptions.

Note

Remember to read the Wiki section in https://github.com/askomics/askoR/wiki

Examples

## Not run: 
    filtered_counts<-GEfilt(data, parameters)

## End(Not run)

askomics/askoR documentation built on Jan. 17, 2025, 6:23 p.m.