DEanalysis: DEanalysis

In askomics/askoR: askoR - Differential Expresion Analysis using edgeR

DEanalysis

Description

Genewise statistical tests for a given coefficient or contrast, with edgeR method.

Usage

DEanalysis(norm_GE, data_list, asko_list, parameters)

Arguments

norm_GE,	large DGEList with normalized counts and data description.
data_list,	list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations).
asko_list,	list of data.frame contain condition, contrast and context informations made by asko3c.
parameters,	list that contains all arguments charged in Asko_start.

Value

SumMat, list (TestResults format class limma) contains for each contrast the significance expression (1/0/-1) for all gene.

Examples

## Not run: 
    sum_table<-DEanalysis(norm_GE, data_list, asko_list, parameters)

## End(Not run)

askomics/askoR documentation built on Feb. 4, 2023, 5 a.m.