DEanalysis: DEanalysis

In askomics/askoR: Differential Expression Analysis using 'edgeR'

DEanalysis

Description

Genewise statistical tests for a given coefficient or contrast, with edgeR method.

Usage

DEanalysis(norm_GE, data_list, asko_list, parameters)

Arguments

norm_GE	large DGEList with normalized counts and data description.
data_list	list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations).
asko_list	list of data.frame contain condition, contrast and context informations made by asko3c.
parameters	list that contains all arguments charged in Asko_start.

Value

list (TestResults format class limma) contains for each contrast the significance expression (1/0/-1) for all gene.

Note

Remember to read the Wiki section in https://github.com/askomics/askoR/wiki

Examples

## Not run: 
    sum_table<-DEanalysis(norm_GE, data_list, asko_list, parameters)

## End(Not run)

askomics/askoR documentation built on Jan. 17, 2025, 6:23 p.m.