GEnorm: GEnorm

In askomics/askoR: askoR - Differential Expresion Analysis using edgeR

GEnorm

Description

Normalize counts

• Calculate normalization factors to scale the filtered library sizes.

• Plot different graphes to explore data before and after normalization.

• Optionally, write file with mean counts and normalized mean counts in Askomics format.

Usage

GEnorm(filtered_GE, asko_list, data_list, parameters)

Arguments

filtered_GE,	large DGEList with filtered counts by GEfilt function.
asko_list,	list of data.frame contain condition, contrast and context informations made by asko3c.
data_list,	list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations)
parameters,	list that contains all arguments charged in Asko_start.

Value

norm_GE, large DGEList with normalized counts and data descriptions.

Examples

## Not run: 
    norm_GE<-GEnorm(filtered_counts, asko, parameters)

## End(Not run)

askomics/askoR documentation built on Feb. 4, 2023, 5 a.m.