GEnorm: GEnorm

In askomics/askoR: Differential Expression Analysis using 'edgeR'

GEnorm

Description

Normalize counts

• Calculate normalization factors to scale the filtered library sizes.

• Plot different graphes to explore data before and after normalization.

• Optionally, write file with mean counts and normalized mean counts in Askomics format.

Usage

GEnorm(filtered_GE, asko_list, data_list, parameters)

Arguments

filtered_GE	large DGEList with filtered counts by GEfilt function.
asko_list	list of data.frame contain condition, contrast and context informations made by asko3c.
data_list	list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations)
parameters	list that contains all arguments charged in Asko_start.

Value

large DGEList with normalized counts and data descriptions.

Note

Remember to read the Wiki section in https://github.com/askomics/askoR/wiki

Examples

## Not run: 
    norm_GE<-GEnorm(filtered_counts, asko, parameters)

## End(Not run)

askomics/askoR documentation built on Jan. 17, 2025, 6:23 p.m.