GeneInfo_OnList: GeneInfo_OnList

In askomics/askoR: Differential Expression Analysis using 'edgeR'

GeneInfo_OnList

Description

Produce a heatmap of the expression of the genes included in the list with information on DE status of each gene and resume all informations on the genes in a table

• Table with gene expression, DE status, clustering, and gene description

• Heatmap of gene expression and DE status

Usage

GeneInfo_OnList(
  list,
  resDEG,
  data,
  parameters,
  title,
  clustering = NULL,
  conditions = NULL,
  contrasts = NULL
)

Arguments

list	list contain all the genes you want to get information on
resDEG	data frame contains for each contrast the significance expression (1/0/-1) for all genes coming from DEanalysis function.
data	list contain all data and metadata (DGEList, samples descritions, contrast, design and annotations)
parameters	list that contains all arguments charged in Asko_start.
title	name of the gene list
clustering	data frame with clusters of each gene produced by ClustAndGO function
conditions	list of the conditions you want to see in graph and table
contrasts	list of the conditions you want to see in graph and table

Value

none

Note

Remember to read the Wiki section in https://github.com/askomics/askoR/wiki

Examples

## Not run: 
   GeneInfo_OnList(list, resDEG, data, parameters, title)
   # OR
   GeneInfo_OnList(list, resDEG, data, parameters, title, clustering)
   # OR
   GeneInfo_OnList(list, resDEG, data, parameters, title, clustering, conditions)
   # OR
   GeneInfo_OnList(list, resDEG, data, parameters, title, clustering, conditions, contrasts)

## End(Not run)

askomics/askoR documentation built on Jan. 17, 2025, 6:23 p.m.