asrinivasan-oa/gread: Fast Reading and Processing of Common Gene Annotation and Next Generation Sequencing Format Files

It allows for fast reading and processing of genome read and annotation files such as gtf/gff/bed/bam. In addition, it also provides functions for advanced manipulations such as filling missing intron coordinates, extracting non-overlapping intron coordinates, extracting overlapping genes etc.

Getting started

Package details

Bioconductor views Annotation Coverage DataImport RNASeq Sequencing Software
MaintainerArunkumar Srinivasan <[email protected]>
LicenseGPL-3
Version0.99.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("asrinivasan-oa/gread")
asrinivasan-oa/gread documentation built on May 10, 2017, 10:18 p.m.