reduce_overlaps: Compute reduced ranges on a gtf/gff/bed/bam object.
In asrinivasan-oa/gread: Fast Reading and Processing of Common Gene Annotation and Next Generation Sequencing Format Files
Description
Usage
Arguments
Value
Description
For internal use only. Computes reduced ranges on a
gtf/gff/bed/bam object by converting the input object to a
GRangesList object and calling reduce() (from
GenomicRanges package) on it. Returns an object of same class
as input.
Usage
1
reduce_overlaps(x, by = "gene_id", ignore_strand = FALSE)
Arguments
x
An object of class gtf/gff/bed/bam.
by
Character vector of column names in x to group by.
ignore_strand
Logical argument to pass to GRanges function.
Indicates whether strand should be ignored when constructing
GRanges object or not. Default is FALSE.
Value
A data.table with reduced ranges.
asrinivasan-oa/gread documentation built on May 10, 2019, 2:04 p.m.
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Description Usage Arguments Value
Description
For internal use only. Computes reduced ranges on a
gtf/gff/bed/bam object by converting the input object to a
GRangesList object and calling reduce() (from
GenomicRanges package) on it. Returns an object of same class
as input.
Usage
1 | reduce_overlaps(x, by = "gene_id", ignore_strand = FALSE)
|
Arguments
x |
An object of class |
by |
Character vector of column names in |
ignore_strand |
Logical argument to pass to |
Value
A data.table with reduced ranges.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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