API for asrinivasan-oa/gread
Fast Reading and Processing of Common Gene Annotation and Next Generation Sequencing Format Files

Global functions
as_bam Man page Source code
as_data_table Man page Source code
as_granges Man page Source code
bam-class Man page
bed-class Man page
compactprint Source code
construct_introns Man page Source code
detect_format Source code
disjoin_overlaps Man page Source code
error_format Source code
exon-class Man page
extract Man page Source code
extract_feature Man page Source code
extract_feature.default Source code
extract_feature.exon Source code
extract_feature.gene Source code
extract_feature.intron Source code
find_overlaps Man page Source code
format_names Source code
format_types Source code
gene-class Man page
gff-class Man page
gff_gene_transcript_cols Source code
gread Man page Source code
gread-package Man page
gread.bam_format Source code
gread.bed_format Source code
gread.default Source code
gread.gff_format Source code
gread.gtf_format Source code
gtf-class Man page
intersect_bed Man page Source code
intersect_overlaps Man page Source code
intron-class Man page
is.bam Source code
is.bed Source code
is.gff Source code
is.gtf Source code
non_overlaps Man page Source code
onAttach Source code
onLoad Source code
read_bam Man page Source code
read_bed Man page Source code
read_format Man page Source code
read_gff Man page Source code
read_gtf Man page Source code
read_table Source code
reduce_overlaps Man page Source code
remove_cols Source code
shallow Man page Source code
strictly_nonunique Man page Source code
supported_formats Man page Source code
test Source code
test_gread Man page Source code
tidy_cols Source code
tidy_cols.bam Source code
tidy_cols.bed Source code
tidy_cols.default Source code
tidy_cols.gff Source code
tidy_cols.gtf Source code
tokenise Source code
asrinivasan-oa/gread documentation built on May 10, 2017, 10:18 p.m.