|convert 'GAlignments' object to 'data.table'
|Convert gtf/gff/bam/bed S4 objects to data.table and preserve...
|Convert data.table to GRanges object
|bam S4 class designed to store data of Binary sequence...
|bed S4 class designed to store data of Browser Extensible...
|Construct introns from gtf/gff objects
|Compute disjoint ranges on a gtf/gff/bed/bam object.
|exon S4 class designed to store exon data and dispatch to the...
|Extract features from gtf/gff objects
|Find overlapping indices of two gtf/gff/bed/bam objects
|gene S4 class designed to store gene data and dispatch to the...
|gff S4 class designed to store data of Gene Feature Format...
|Fast Reading and Processing of Common Gene Annotation and...
|gtf S4 class designed to store data of Gene Transfer Format...
|Extract gtf coordinates intersecting input bed file
|Compute intersecting ranges on a gtf/gff/bed/bam object with...
|intron S4 class designed to store intron data and dispatch to...
|Generate non-overlapping intron coordinates
|Quick and easy reading of gtf/gff/bed/bam files
|Compute reduced ranges on a gtf/gff/bed/bam object.
|shallow copy a 'data.table'
|Return only those rows where rows per group is > 1.
|Currently supported formats
|Run a set of tests
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