Man pages for asrinivasan-oa/gread
Fast Reading and Processing of Common Gene Annotation and Next Generation Sequencing Format Files

as_bamconvert 'GAlignments' object to 'data.table'
as_data_tableConvert gtf/gff/bam/bed S4 objects to data.table and preserve...
as_grangesConvert data.table to GRanges object
bam-classbam S4 class designed to store data of Binary sequence...
bed-classbed S4 class designed to store data of Browser Extensible...
construct_intronsConstruct introns from gtf/gff objects
disjoin_overlapsCompute disjoint ranges on a gtf/gff/bed/bam object.
exon-classexon S4 class designed to store exon data and dispatch to the...
extractExtract features from gtf/gff objects
find_overlapsFind overlapping indices of two gtf/gff/bed/bam objects
gene-classgene S4 class designed to store gene data and dispatch to the...
gff-classgff S4 class designed to store data of Gene Feature Format...
greadFast Reading and Processing of Common Gene Annotation and...
gtf-classgtf S4 class designed to store data of Gene Transfer Format...
intersect_bedExtract gtf coordinates intersecting input bed file
intersect_overlapsCompute intersecting ranges on a gtf/gff/bed/bam object with...
intron-classintron S4 class designed to store intron data and dispatch to...
non_overlapsGenerate non-overlapping intron coordinates
read_formatQuick and easy reading of gtf/gff/bed/bam files
reduce_overlapsCompute reduced ranges on a gtf/gff/bed/bam object.
shallowshallow copy a 'data.table'
strictly_nonuniqueReturn only those rows where rows per group is > 1.
supported_formatsCurrently supported formats
test_greadRun a set of tests
asrinivasan-oa/gread documentation built on May 10, 2017, 10:18 p.m.