API for astrolabediagnostics/orloj
Utilities for the Astrolabe Diagnostics platform
| Global functions | |
|---|---|
| .addMarkerIntensityDotBoxPlots | Source code |
| .addMarkerIntensityHeatMap | Source code |
| .addMarkerIntensityRidgePlots | Source code |
| .calculateCountPercent | Source code |
| .calculateDotBoxPlotParams | Source code |
| .calculateMeanChannelIntensity | Source code |
| .chooseLevel | Source code |
| .chooseScaleDiscrete | Source code |
| .convertChannelsToDesc | Source code |
| .convertHierarchyToDesc | Source code |
| .convertProfilingToImmport | Source code |
| .exportImmportStats | Source code |
| .flowTransformChannels | Source code |
| .generateDeResultsSpreadsheet | Source code |
| .generateFcHeatMap | Source code |
| .getMarkerLegendLabel | Source code |
| .getSubsetChannelStatistics | Source code |
| .getSubsetChannels | Source code |
| .getSubsetChannelsFull | Source code |
| .identifyFcsInstrumentMissingCyt | Source code |
| .immportExportColOrder | Source code |
| .immportExportHeader | Source code |
| .loadChannelDensities | Source code |
| .massSuspectValues | Source code |
| .plotJoy | Source code |
| .plotLiveDead | Source code |
| .plotShepard | Source code |
| .removeEqFromDesc | Source code |
| .removeMassFromDesc | Source code |
| .removeSpecialCasesFromDesc | Source code |
| .reportFlowBeads | Source code |
| .reportFlowCytometryDebrisDoublets | Source code |
| .reportMassBeads | Source code |
| .reportMassCytometryDebrisDoublets | Source code |
| .shortenSampleNames | Source code |
| addBackticks | Man page Source code |
| astrolabeDebrisLabels | Man page Source code |
| beadChannelNames | Man page Source code |
| calculateFcsDigest | Man page Source code |
| citeseqPreprocess | Man page Source code |
| convertFlowFrame | Man page Source code |
| differentialAbundanceAnalysis | Man page Source code |
| experimentAssignmentSubsets | Man page Source code |
| experimentCellSubsetChannelStatistics | Man page Source code |
| experimentCellSubsetCounts | Man page Source code |
| experimentCellSubsetMap | Man page Source code |
| experimentDifferentialExpressionAnalysis | Man page Source code |
| experimentLabelingStrategy | Man page Source code |
| experimentMds | Man page Source code |
| experimentSummary | Man page Source code |
| exportImmport | Man page Source code |
| exportPlot | Man page Source code |
| exportReport | Man page Source code |
| fcsExprs | Man page Source code |
| filenameify | Man page Source code |
| findStandardMassCytometryChannels | Man page Source code |
| flowPreprocess | Man page Source code |
| formatPvalue | Man page Source code |
| getExperimentSampleFeatures | Man page Source code |
| getSampleFilename | Man page Source code |
| getSampleName | Man page Source code |
| identifyFcsInstrument | Man page Source code |
| importCiteseqChannels | Man page Source code |
| importFcsChannels | Man page Source code |
| isFileCiteseq | Man page Source code |
| isSample | Man page Source code |
| jsDivergence | Man page Source code |
| jsDivergenceMtx | Man page Source code |
| kde2dVec | Man page Source code |
| loadExperiment | Man page Source code |
| loadSample | Man page Source code |
| massPreprocess | Man page Source code |
| massTransformMassChannels | Man page Source code |
| nameVector | Man page Source code |
| plotBarPlot | Man page Source code |
| plotBoxPlot | Man page Source code |
| plotHeatmap | Man page Source code |
| plotHeatmapAggregate | Man page Source code |
| plotScatterPlot | Man page Source code |
| reportBeads | Man page Source code |
| reportCellAssignments | Man page Source code |
| reportCellCounts | Man page Source code |
| reportCombineAggregateStatistics | Man page Source code |
| reportDifferentialAbundanceAnalysis | Man page Source code |
| reportDifferentialExpressionAnalysis | Man page Source code |
| reportMarkerThresholds | Man page Source code |
| reportMds | Man page Source code |
| reportNonCells | Man page Source code |
| sampleCellSubsetChannelStatistics | Man page Source code |
| sampleCellSubsetCounts | Man page Source code |
| sampleSummary | Man page Source code |
