Man pages for astrolabediagnostics/orloj
Utilities for the Astrolabe Diagnostics platform

addBackticksAdd backticks to a string.
astrolabeDebrisLabelsAstrolabe debris labels.
auroraPreprocessPreprocess Aurora sample.
auroraTransformChannelsTransform Aurora channels.
beadChannelNamesBead channel names.
calculateFcsDigestCalculate parameter digest for sample.
citeseqPreprocessPreprocess citeseq sample.
convertFlowFrameConvert a FlowCore flow_frame to Astrolabe sample.
differentialAbundanceAnalysisDifferential abundance analysis.
experimentCellSubsetChannelStatisticsExperiment cell subset channel statistics.
experimentCellSubsetCountsExperiment cell subset counts.
experimentCellSubsetMapMap experiment cell subsets to numerical values.
experimentMdsMDS map.
experimentQcMetricsQuality control metrics.
experimentSummaryAstrolabe experiment summary.
exportImmportImmport export.
exportPlotExport an orloj plot list.
exportReportExport an orloj report.
fcsExprsGet expression data from sample.
filenameifyConvert a string into a filename-friendly format.
findStandardMassCytometryChannelsFind indices of standard mass cytometry channels.
flowPreprocessPreprocess flow cytometry sample.
formatPvalueFormat a p-value or FDR into a nice string.
getCellCountsGet cell counts for a given analysis type.
getCellSubsetLevelsAstrolabe cell subset levels.
identifyFcsInstrumentIdentify FCS file instrument.
importFcsChannelsImport FCS Channel Information.
importFcsFileImport an FCS File.
isSampleTest if a given object is an Astrolabe sample.
jsDivergenceJensen-Shannon Divergence
jsDivergenceMtxJensen-Shannon Divergence Between Matrices
kde2dVecVectorized Two-dimensional Kernel Density Estimation
loadExperimentLoad Astrolabe experiment.
loadSampleLoad Astrolabe sample.
massFindNonBeadEventsFind the indices of non-bead events.
massPreprocessPreprocess mass cytometry sample.
massTransformMassChannelsTransform expression data for mass cytometry sample.
nameVectorName elements of vector with their value
plotBarPlotBar plot object.
plotBoxPlotBox plot object.
plotHeatmapHeat map object.
plotHeatmapAggregateAggregate data and generate a heat map object.
plotScatterPlotScatter plot object.
preprocessPreprocess an Astrolabe sample.
reportBeadsBead report.
reportCellAssignmentsCell assignments report.
reportCellCountsCell counts report.
reportCombineAggregateStatisticsCombined aggregate statistics reports.
reportDifferentialAbundanceAnalysisDifferential abundance analysis report.
reportMdsMDS Map report.
reportNonCellsNon-cells report.
sampleCellSubsetChannelStatisticsCell subset channel statistics.
sampleCellSubsetCountsCell subset counts.
sampleSummaryAstrolabe sample summary.
astrolabediagnostics/orloj documentation built on Dec. 2, 2018, 2:22 p.m.