PolyDimPlot: Polygon DimPlot
In atakanekiz/Seurat3.0: Tools for Single Cell Genomics
Description
Usage
Arguments
Value
Description
Plot cells as polygons, rather than single points. Color cells by identity, or a categorical variable
in metadata
Usage
1
2
PolyDimPlot(object, group.by = NULL, cells = NULL,
poly.data = "spatial", flip.coords = FALSE)
Arguments
object
Seurat object
group.by
A grouping variable present in the metadata. Default is to use the groupings present
in the current cell identities (Idents(object = object))
cells
Vector of cells to plot (default is all cells)
poly.data
Name of the polygon dataframe in the misc slot
flip.coords
Flip x and y coordinates
Value
Returns a ggplot object
atakanekiz/Seurat3.0 documentation built on May 26, 2019, 2:33 a.m.
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Description Usage Arguments Value
Description
Plot cells as polygons, rather than single points. Color cells by identity, or a categorical variable in metadata
Usage
1 2 | PolyDimPlot(object, group.by = NULL, cells = NULL,
poly.data = "spatial", flip.coords = FALSE)
|
Arguments
object |
Seurat object |
group.by |
A grouping variable present in the metadata. Default is to use the groupings present
in the current cell identities ( |
cells |
Vector of cells to plot (default is all cells) |
poly.data |
Name of the polygon dataframe in the misc slot |
flip.coords |
Flip x and y coordinates |
Value
Returns a ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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