ReadAlevin: Load in data from Alevin pipeline
In atakanekiz/Seurat3.0: Tools for Single Cell Genomics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Enables easy loading of binary format matrix provided by Alevin
Usage
1
ReadAlevin(base.path)
Arguments
base.path
Directory containing the alevin/quant_mat*
files provided by Alevin.
Value
Returns a matrix with rows and columns labeled
Author(s)
Avi Srivastava
Examples
1
2
3
4
5
6
7
## Not run:
data_dir <- 'path/to/output/directory'
list.files(data_dir) # Should show alevin/quants_mat* files
expression_matrix <- ReadAlevin(base.path = data_dir)
seurat_object = CreateSeuratObject(counts = expression_matrix)
## End(Not run)
atakanekiz/Seurat3.0 documentation built on May 26, 2019, 2:33 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Enables easy loading of binary format matrix provided by Alevin
Usage
1 | ReadAlevin(base.path)
|
Arguments
base.path |
Directory containing the alevin/quant_mat* files provided by Alevin. |
Value
Returns a matrix with rows and columns labeled
Author(s)
Avi Srivastava
Examples
1 2 3 4 5 6 7 | ## Not run:
data_dir <- 'path/to/output/directory'
list.files(data_dir) # Should show alevin/quants_mat* files
expression_matrix <- ReadAlevin(base.path = data_dir)
seurat_object = CreateSeuratObject(counts = expression_matrix)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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