This function filters the expression of the supplied countData object, by invoking the dafsFilter function. dafsFilter is a filtering function used to remove rows (genes) of various expression data.
A countData object.
Boolean, toggles plotting.
This function filters the expression of the supplied countData object using a Data Adaptive Flag filter. The internal function (dafsFilter) uses a vector to store Kolmogorov Smirnov distance statistics, loops through cuts of the data to determine targeted K-S statistic, selects data greater than a quantile and runs Mclust on that data to determine theoretical distribution. The wrapper uses simpleFilter to determine first left-most local minima (using the Earth library).
Returns an invisible filtered countData object.
AJ Vaestermark, JR Walters.
BMC Bioinformatics, 2014, 15:92
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