dafsFilterWrapper: dafsFilterWrapper Function to filter expression data within a...
In avastermark19/doseR_development: Test Package of doseR

Description Usage Arguments Details Value Author(s) References

This function filters the expression of the supplied countData object, by invoking the dafsFilter function. dafsFilter is a filtering function used to remove rows (genes) of various expression data.

1	dafsFilterWrapper(cD, PLOT=TRUE)

`cD`	A countData object.
`PLOT`	Boolean, toggles plotting.

This function filters the expression of the supplied countData object using a Data Adaptive Flag filter. The internal function (dafsFilter) uses a vector to store Kolmogorov Smirnov distance statistics, loops through cuts of the data to determine targeted K-S statistic, selects data greater than a quantile and runs Mclust on that data to determine theoretical distribution. The wrapper uses simpleFilter to determine first left-most local minima (using the Earth library).

Returns an invisible filtered countData object.

AJ Vaestermark, JR Walters.

BMC Bioinformatics, 2014, 15:92

avastermark19/doseR_development documentation built on May 6, 2019, 4:31 p.m.