Description Usage Arguments Details Value Author(s) References
This function plots the expression of the supplied countData object, using ratios between a pair of selected treatments.
1 | plotRatioDensity(cD, groupings, treatment1, treatment2, mode_mean, LOG2,...)
|
cD |
A countData object. |
groupings |
A grouping (annotation column), e.g. groupings="something". |
treatment1 |
Symbol, treatment 1. |
treatment2 |
Symbol, treatment 2. |
mode_mean |
Boolean, Calculate RowMeans or RowMedians. |
LOG2 |
Boolean, Calculate LOG2. |
... |
Passthrough arguments to boxplot (additional arguments affecting the summary produced). |
This function plots expression of the supplied countData object using ratios of treatment1/treatment2.
Returns an invisible data frame containing the x-values and corresponding density for each applicable annotation column entry.
AJ Vaestermark, JR Walters.
The "doseR" package, 2018 (in press).
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