quantFilter: quantFilter Function to filter expression data of a countData...
In avastermark19/doseR_development: Test Package of doseR
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
This function filters the expression of the supplied countData object; quantFilter is a filtering function used to remove rows (genes) of various expression data.
Usage
1
Arguments
cD
A countData object.
perc_cutoff
The lower cutoff, expressed as a percentage.
perc_cutoff2
The upper cutoff, expressed as a percentage.
MEDIAN
Boolean, Calculate RowMeans or RowMedians.
Details
This function filters the expression of the supplied countData object, based on a selected percentage cutoff.
Value
Returns a filtered countData object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
avastermark19/doseR_development documentation built on May 6, 2019, 4:31 p.m.
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Description Usage Arguments Details Value Author(s) References
Description
This function filters the expression of the supplied countData object; quantFilter is a filtering function used to remove rows (genes) of various expression data.
Usage
1 |
Arguments
cD |
A countData object. |
perc_cutoff |
The lower cutoff, expressed as a percentage. |
perc_cutoff2 |
The upper cutoff, expressed as a percentage. |
MEDIAN |
Boolean, Calculate RowMeans or RowMedians. |
Details
This function filters the expression of the supplied countData object, based on a selected percentage cutoff.
Value
Returns a filtered countData object.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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