simpleFilter: simpleFilter Function to filter expression data of a...

In avastermark19/doseR_development: Test Package of doseR

Description

simpleFilter is a filtering function used to remove rows (genes) of various expression data.

Usage

simpleFilter(cD, mean_cutoff=NULL, min_cutoff=NULL, median_cutoff=NULL, counts=TRUE)

Arguments

cD	A countData object.
mean_cutoff	The lower cutoff, using mean.
min_cutoff	The cutoff, expressed as a minimum acceptable value.
median_cutoff	The cutoff, using a median value.
counts	Boolean, use raw counts data (default) or RPKM.

Details

This function filters the expression of the supplied countData object, based on a selected cutoff.

Value

Returns a filtered countData object.

Author(s)

AJ Vaestermark, JR Walters.

References

The "doseR" package, 2018 (in press).

avastermark19/doseR_development documentation built on May 6, 2019, 4:31 p.m.