test_diffs: test_diffs Statistics function to summarize expression data...
In avastermark19/doseR_development: Test Package of doseR
Description
Usage
Arguments
Details
Value
Author(s)
References
Description
generateStats is a summary function used on various expression data , using ratios between selected treatments.
Usage
1
test_diffs(cD, groupings, treatment1, treatment2, mode_mean, LOG2)
Arguments
cD
A countData object.
groupings
A grouping (annotation column), e.g. groupings="something".
treatment1
Symbol, treatment 1.
treatment2
Symbol, treatment 2.
mode_mean
Boolean, Calculate RowMeans or RowMedians.
LOG2
Boolean, Calculate LOG2.
Details
This function completes summary statistics of the expression of the supplied countData object.
Value
Returns an invisible list of summary statistics, kruskal test and raw data of a countData object, using ratios between selected treatments.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
avastermark19/doseR_development documentation built on May 6, 2019, 4:31 p.m.
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Description Usage Arguments Details Value Author(s) References
Description
generateStats is a summary function used on various expression data , using ratios between selected treatments.
Usage
1 | test_diffs(cD, groupings, treatment1, treatment2, mode_mean, LOG2)
|
Arguments
cD |
A countData object. |
groupings |
A grouping (annotation column), e.g. groupings="something". |
treatment1 |
Symbol, treatment 1. |
treatment2 |
Symbol, treatment 2. |
mode_mean |
Boolean, Calculate RowMeans or RowMedians. |
LOG2 |
Boolean, Calculate LOG2. |
Details
This function completes summary statistics of the expression of the supplied countData object.
Value
Returns an invisible list of summary statistics, kruskal test and raw data of a countData object, using ratios between selected treatments.
Author(s)
AJ Vaestermark, JR Walters.
References
The "doseR" package, 2018 (in press).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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