b-coli/ICITools: R Implementation of Tools for Calculating the Index of Cell Identity

ICITools is an implementation of the method for computation of a Specificity Score table given cell-type specific gene expression data. ICItools also contains functions that implement the computaiton of the Index of Cell Identity to identify the most likely cell type of a gene expression profile. The two computationally intensive steps implemented by this package (compute_spec_table and compute_ici_scores) are compatible with the furrr::future_map function, enabling parallelization for multicore machines. The methods in this package were originally developed and described by Efroni, et al. (2015).

Getting started

Package details

Maintainer
Licensefile LICENSE
Version1.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("b-coli/ICITools")
b-coli/ICITools documentation built on June 5, 2020, 11:23 p.m.