gather_information_level_data: Find ICI scores over a range of information levels

In b-coli/ICITools: R Implementation of Tools for Calculating the Index of Cell Identity

Description

Find ICI scores over a range of information levels

Usage

gather_information_level_data(expression_data, spec_table,
  information_range = seq(0, 100, 0.5), min_spec_score = 0.15,
  n_samples = 100)

Arguments

expression_data	data frame with at least one column, "Locus", and additional columns containing expression values for each cell.
spec_table	a data.frame containing at least 4 columns: Locus Cell_Type spec (the Specificity score calculated using compute_spec_table) mean_expr (the mean expression level for that locus/cell type combination used to generated spec scores)
information_range	numeric vector, range of information scores to loop over
min_spec_score	minimum useful information score (default, 0.15)
n_samples	number of sub-samples to take (useful for limiting computational resources required; default 100)

Value

a data frame with ici scores for all sampled cells, all cell types, at all information levels in information_range.

b-coli/ICITools documentation built on Dec. 27, 2021, 7:40 a.m.