bin_expression_data | Compute bins for expression data |
compute_ici_for_cell | Compute ici score for all cell types for a given cell's... |
compute_ici_pval | Compute p-values for a single expression/cell type profile... |
compute_ici_score_for_cell_type | Compute ICI score for a given cell type (Internal) |
compute_ici_scores | Compute ICI scores for a set of cells |
compute_mean_expr | Comptue mean expression for an 'expression_data' object |
compute_spec | Compute Specification Score |
compute_spec_table | Compute specification table for cell-type expression data |
efroni_bin | Optimize the selection of bin size for defining two... |
efroni_get_background_bin | Find the background bin in an expression vector |
efroni_get_binsizes | Get binsize range for optimization |
efroni_mean | Compute mean expression for each cell type (Efroni method) |
extract_signal_from_info_data | Extract mean, maximimum ICI signal per cell per information... |
extract_var_from_info_data | Extract variation between information levels for all cells... |
find_ici_markers | Find Markers for ICI score computation |
gather_information_level_data | Find ICI scores over a range of information levels |
melted_to_mat | Convert melted data.frame (or tibble) to matrix |
optimize_information_level | Attempt to optimize information level |
test_birnbaum | Toy dataset adapted from Birnbaum, et al., 2011 |
test_ici | Random toy dataset simulating cell profiles |
test_spec | Random toy dataset simulating marker loci |
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