test_birnbaum: Toy dataset adapted from Birnbaum, et al., 2011
In b-coli/ICITools: R Implementation of Tools for Calculating the Index of Cell Identity
Description
Usage
Format
References
Description
Toy dataset adapted from Birnbaum, et al., 2011
Usage
1
Format
A dataset of 1 locus, measured across 6 hypothetical cell types (2-4 replicates per cell type).
Conforms to the expected expression_data format, with 3 columns:
- Locus
Locus identifer (chr)
- Expression
Expression of this locus in a given dataset (dbl)
- Cell_Type
cell type of the data set (chr)
- Sample_Name
name of the "sample" this locus/Cell_Type measurement originated from
Can be used to test the compute_spec_table function. To reproduce results
reported in Birnbaum, et al., (2011), supply the function:
'bin_func <- function(df) dplyr::mutate(df, bin = cut(Expression, 3))'
as the bin_method, and null string, "", as the mean_method to
compute_spec_table.
References
Birnbaum, KD. and Kussell, E. 2011. "Measuring cell identity in noisy
biological systems". Nucl. Acids. Res. 39(21)
b-coli/ICITools documentation built on Dec. 27, 2021, 7:40 a.m.
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Description Usage Format References
Description
Toy dataset adapted from Birnbaum, et al., 2011
Usage
1 |
Format
A dataset of 1 locus, measured across 6 hypothetical cell types (2-4 replicates per cell type). Conforms to the expected expression_data format, with 3 columns:
- Locus
Locus identifer (chr)
- Expression
Expression of this locus in a given dataset (dbl)
- Cell_Type
cell type of the data set (chr)
- Sample_Name
name of the "sample" this locus/Cell_Type measurement originated from
Can be used to test the compute_spec_table function. To reproduce results reported in Birnbaum, et al., (2011), supply the function: 'bin_func <- function(df) dplyr::mutate(df, bin = cut(Expression, 3))' as the bin_method, and null string, "", as the mean_method to compute_spec_table.
References
Birnbaum, KD. and Kussell, E. 2011. "Measuring cell identity in noisy biological systems". Nucl. Acids. Res. 39(21)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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