API for bahlolab/exSTRa
Expanded STR algorithm: detecting expansions in Illumina sequencing data
| Global functions | |
|---|---|
| .onAttach | Source code |
| [.exstra_score | Man page |
| [.exstra_tsum | Man page |
| `[.exstra_db` | Source code |
| `[.exstra_score` | Source code |
| `[.exstra_tsum` | Source code |
| `length<-.exstra_score` | Source code |
| `plot_names<-.exstra_score` | Source code |
| add_alpha_ | Man page Source code |
| as.exstra_score | Man page Source code |
| copy | Man page |
| copy.exstra_db | Source code |
| copy.exstra_score | Source code |
| copy.exstra_tsum | Source code |
| dim.exstra_score | Source code |
| exstra | Man page |
| exstra_db_new_ | Source code |
| exstra_known | Man page |
| exstra_score_new_ | Man page Source code |
| exstra_tsum_new_ | Man page Source code |
| exstra_wgs_pcr_2 | Man page |
| filter_low_scores | Man page Source code |
| filter_sex | Man page Source code |
| ggexstra_ecdf | Man page Source code |
| ggplot.exstra_score | Man page Source code |
| is.exstra_db | Man page Source code |
| is.exstra_score | Man page Source code |
| is.exstra_tsum | Man page Source code |
| length.exstra_score | Source code |
| loci | Man page |
| loci.exstra_db | Source code |
| loci_min_exp | Man page Source code |
| loci_normal | Man page Source code |
| loci_normal_exp | Man page Source code |
| loci_text_info | Man page |
| loci_text_info.exstra_db | Source code |
| make_quantiles_matrix | Source code |
| p_value_sd_ | Man page Source code |
| p_values | Man page Source code |
| parReplicate | Source code |
| plot.exstra_score | Man page Source code |
| plot.exstra_tsum | Man page Source code |
| plot_many_str_score | Source code |
| plot_multi | Man page Source code |
| plot_names | Man page |
| plot_names.exstra_score | Source code |
| plot_names<- | Man page |
| print.exstra_db | Source code |
| print.exstra_score | Source code |
| print.exstra_tsum | Source code |
| qm_tsum_stat_ | Source code |
| qm_tsum_stat_bare_ | Man page Source code |
| rbind_score | Man page Source code |
| rbind_score_list | Man page Source code |
| read_exstra_db | Man page Source code |
| read_exstra_db_known | Source code |
| read_exstra_db_txt_guesser | Source code |
| read_exstra_db_ucsc | Man page Source code |
| read_exstra_db_xlsx | Source code |
| read_score | Man page Source code |
| sample_safe | Source code |
| strs_read_ | Source code |
| suggested_exstra_pipeline | Man page Source code |
| trim_index_ | Source code |
| trim_matrix_ | Source code |
| trim_vector | Source code |
| tsum_p_value_summary | Man page Source code |
| tsum_statistic_1locus | Source code |
| tsum_test | Man page Source code |
| verify.exstra_db | Source code |
| verify.exstra_score | Source code |
