Files in bahlolab/exSTRa
Expanded STR algorithm: detecting expansions in Illumina sequencing data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/CLASS_exstra_db.R R/CLASS_exstra_score.R R/CLASS_exstra_tsum.R R/GENERICS.R R/TODO.md R/TRASH.R R/add_alpha_.R R/exstra_known.R R/exstra_wgs_pcr_2.R R/filter_low_scores.R R/filter_sex.R R/loci_normal_expansion.R R/munoz_rueda_al1.R R/p_values.R R/plot_multi.R R/private_functions.R R/rbind_score_list.R R/read_exstra_db.R R/read_exstra_db_known.R R/read_exstra_db_txt_guesser.R R/read_exstra_db_ucsc.R R/read_exstra_db_xlsx.R R/read_score.R R/suggested_exstra_pipeline.R R/tsum_p_value_summary.R R/tsum_test.R README.md
Read-and-delete-me
data-raw/exstra_known.R data-raw/exstra_wgs_pcr_2.R
data/exstra_known.RData
data/exstra_wgs_pcr_2.RData
exSTRa.Rproj
examples/.gitignore
examples/exSTRa_score_analysis.R examples/exSTRa_suggested_pipeline.pdf
inst/extdata/HiSeqXTen_WGS_PCR_2.txt
inst/extdata/exSTRa_pipeline_graph.gv
inst/extdata/repeat_expansion_disorders.txt
man/as.exstra_score.Rd man/copy.exstra_score.Rd man/copy.exstra_tsum.Rd man/dim.exstra_score.Rd man/exSTRa.Rd man/exstra_known.Rd man/exstra_tsum_new_.Rd man/exstra_wgs_pcr_2.Rd man/is.exstra_tsum.Rd man/length.exstra_score.Rd man/loci.Rd man/p_values.Rd man/plot.exstra_tsum.Rd man/plot_multi.Rd man/rbind_score_list.Rd man/suggested_exstra_pipeline.Rd man/tsum_p_value_summary.Rd man/tsum_test.Rd perl/README.md tests/testthat.R tests/testthat/test_number_names.R tests/testthat/test_rbind_score_list.R tests/testthat/test_tsum_test.R tests/testthat/test_with_large_data.R
bahlolab/exSTRa documentation built on Nov. 8, 2017, 10:52 a.m.