exSTRa: Expanded STR algorithm

In bahlolab/exSTRa: Expanded STR algorithm: detecting expansions in Illumina sequencing data

Expanded STR algorithm

Description

Detecting expansions with paired-end Illumina sequencing data

Details

Package:	exSTRa
Type:	Package
Version:	0.8
Date:	2017-09-04
License:	GPL-2

For an overview of how to use the package, see TODO.

Author(s)

Maintainer: [e-mail]

References

Detecting known repeat expansions with standard protocol next generation sequencing, towards developing a single screening test for neurological repeat expansion disorders. Rick M. Tankard, Martin B. Delatycki, Paul J. Lockhart, Melanie Bahlo. bioRxiv 157792; June 2017. doi: https://doi.org/10.1101/157792

See Also

Data must first be prepared from BAM/CRAM files with the Perl module <Bio::STR::exSTR>.

Examples

exstra_wgs_pcr_2["HD"]

plot(exstra_wgs_pcr_2["HD"])

bahlolab/exSTRa documentation built on Sept. 17, 2022, 5:08 p.m.