exstra_wgs_pcr_2: Repeat score data from cohort WGS_PCR_2.

exstra_wgs_pcr_2R Documentation

Repeat score data from cohort WGS_PCR_2.

Description

Table of known repeat expansion disorder loci.

Usage

data(exstra_wgs_pcr_2)

Format

An exstra_score object:

data

A data.table repeat scores, one row for each read

samples

A data.table of input samples

db

A data.table of the known loci

input_type

Indication that the loci are referred to by name (as opposed to genomic position)

Source

Rick M. Tankard, Martin B. Delatycki, Paul J. Lockhart, Melanie Bahlo. Detecting known repeat expansions with standard protocol next generation sequencing, towards developing a single screening test for neurological repeat expansion disorders. bioRxiv 157792; doi: https://doi.org/10.1101/157792


bahlolab/exSTRa documentation built on Sept. 17, 2022, 5:08 p.m.