Man pages for bahlolab/exSTRa
Expanded STR algorithm: detecting expansions in Illumina sequencing data

as.exstra_scoreConvert a compatable object to the exstra_score class
copy.exstra_scoreCopy an exstra_score object so referencing does not cause...
copy.exstra_tsumCopy an exstra_tsum object
dim.exstra_scoreDimension of exstra_score object
exSTRaExpanded STR algorithm
exstra_knownKnown repeat expansion disorder loci.
exstra_tsum_new_Create a new exstra_tsum object.
exstra_wgs_pcr_2Repeat score data from cohort WGS_PCR_2.
is.exstra_tsumCheck if an object is an instance of the exstra_tsum class.
length.exstra_scoreLength of an exstra_score object
lociReturn the loci of the selected object
plot.exstra_tsumPlot exstra_tsum, highlighting significant results
plot_multiMultiple STR score ECDF plots
p_valuesReturn a data.table with p-values of a tsum_exstra object.
rbind_score_listCombine multiple exSTRa data objects.
suggested_exstra_pipelineCreate a graph of the suggested pipeline
tsum_p_value_summarycreate summary of significance on a exstra_tsum object
tsum_testGenerate T sum statistics and p-values from simulation.
bahlolab/exSTRa documentation built on Nov. 8, 2017, 10:52 a.m.