compute_tissue_corr_matrix: Compute the correlation between two matrices variables(...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Compute the correlation between two matrices variables( alphabetical order)

Description

Compute the correlation between two matrices variables( alphabetical order)

Usage

compute_tissue_corr_matrix(A, B, label.A, label.B, method, log2 = TRUE,
  report = TRUE, Latex = FALSE, Kable = TRUE, Grid = TRUE,
  headers = TRUE)

Arguments

A	numeric data.frame for the first study to compare
B	numeric data.frame for the second study to compare
label.A	character string. Name of the first study used in the report.
label.B	character string. Name of the second study used in the report.
method	character string. Method for base::cor, either "pearson", "spearman" or "kendall".
log2	logical. Default: TRUE. Whether the data should be transform with log2 or not
report	boolean. Default:TRUE. Whether to output the result before returning the matrix.
Latex	boolean. Default: FALSE. Whether to output in latex format.
Kable	boolean. Default: TRUE. Whether to report with kable.
Grid	boolean. Default: TRUE. Whether to create an image of the output.
headers	boolean. Default: TRUE. Whether to use headers for the reporting.

Value

a matrix with the columns correlation of the two studies.

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.