cross.sharedDistrib_firstLast: Draw the figures of the shared expression for the two...

In barzine/barzinePhdR: Code developed while and for my PhD thesis at the EMBL-EBI

Draw the figures of the shared expression for the two datasets.

Description

Draw the figures of the shared expression for the two datasets.

Usage

cross.sharedDistrib_firstLast(..., DF1, DF2, omit.zero = TRUE,
  threshold = 0, strict = FALSE, colour, annotate = TRUE,
  publish = TRUE, indexCol)

Arguments

...	more arguments to be treated
DF1	numeric data.frame comprising the expression data of the first study.
DF2	numeric data.frame comprising the expression data of the second study.
omit.zero	boolean. Default: TRUE. Whether the genes which do not reach the minimal expression threshold in any tissue should be stripped from the output.
threshold	numeric. Default: 0. Minimal level of expression to be considered as expressed.
strict	boolean. Default:FALSE. Whether if only strict equality between the breadth of expression of each gene between the two studies should be considered or if the "lapse" argument should be used to define 'similar' cases as well.
colour	vector of character strings to personalise the colours of the plot.
annotate	boolean. Default: TRUE. Whether to annotate the figures with the counts in each category for an accurate read.
publish	boolean. Default: TRUE. Whether to apply ggplot2::theme_bw to the plot.
indexCol	vector of integer. Comprise the index of the columns for which the expression breadth has to be compared.

Value

a list of two figures.

barzine/barzinePhdR documentation built on Nov. 23, 2024, 8:54 p.m.