Man pages for basilkhuder/extendSC
Extends functionalities of scRNA-Seq workflows
| chooseClusterRes | Allows experimentation of different cluster resolutions on a... |
| crToMTX | Takes a CellRanger filtered output and returns a gene matrix |
| crToSeurat | Takes a directory CellRanger counts output and returns a list... |
| dendoSeurat | Produce hierarchical clustering for a sub-cluster of a... |
| extractCounts | Easily extract counts from a Seurat object |
| extractMeta | Easily extract Seurat meta-data into a tibble |
| featureFiltration | Filters cells from a Seurat object based upon the amount of... |
| mergeSubCluster | Merge a reclusted sub-sample back into main object |
| processSeurat | Pipes together several downstream Seurat steps including... |
| renameClusters | Easily rename/annotate Seurat clusters |
| umapCellAnno | Produces a UMAP plot from a Seurat object that can put... |
| variableGeneMatrix | Produces a variable gene correlation heatmap and returns a... |
