chooseClusterRes: Allows experimentation of different cluster resolutions on a...
In basilkhuder/extendSC: Extends functionalities of scRNA-Seq workflows

Allows experimentation of different cluster resolutions on a Seurat object.

chooseClusterRes(
  seurat.obj,
  cluster.res,
  ident.plot = TRUE,
  feature.plot = NULL,
  plot.cols = NULL
)

`seurat.obj`	A seurat object.
`cluster.res`	Cluster resolutions interested in
`feature.plot`	Produce a feature plot based on given genes

UMAP and a Feature Plot

1	chooseClusterRes(seurat.obj, cluster.res = list(.1,.2,.5), feature.plot = c("gene1","gene2","gene3"))

basilkhuder/extendSC documentation built on July 23, 2021, 1:17 p.m.

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README.md

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