crToSeurat: Takes a directory CellRanger counts output and returns a list...

In basilkhuder/extendSC: Extends functionalities of scRNA-Seq workflows

Description

Takes a directory CellRanger counts output and returns a list of Seurat objects or a merged Seurat object

Usage

crToSeurat(
  directory,
  min.cells = 3,
  min.features = 200,
  sample.names = c("sample"),
  merge = FALSE
)

Arguments

seurat.obj	A Seurat object.
min_cells	Include features detected in at least this many cells.
min_features	Include cells where at least this many features are detected

Value

A Seurat object

Examples

crToSeurat(directory = "Files", min_cells = 3, min_features = 3)

basilkhuder/extendSC documentation built on July 23, 2021, 1:17 p.m.